Add doxygen config. Update README, copyrights.

Signed-off-by: Tushar Gohad <tushar.gohad@intel.com>

AUTHORS

@@ -0,0 +1,8 @@
+Original Authors
+----------------
+
+ * Tushar Gohad
+ * Kevin M Greenan
+ * Eric Lambert
+ * Mark W Storer
+

COPYING

@@ -1,4 +1,6 @@
 /* 
+ * Copyright (c) 2014 Tushar Gohad, Kevin M Greenan, Eric Lambert, Mark Storer
+ * 
  * Redistribution and use in source and binary forms, with or without
  * modification, are permitted provided that the following conditions are met:
  *

NEWS

@@ -1 +1 @@
-Release 0.1
+Release 0.9.10

README

@@ -1,58 +1,412 @@
 ## Introduction
 
-Liberasurecode is an erasure code library which can support multiple
-erasure code 'backends'. The repository includes a Jerasure for Reed-Solomon
-implementation.
+.      .                                              .
+|   o  |                                              |
+|   .  |.-.  .-. .--..-.  .--..  . .--..-. .-..-.  .-.| .-.
+|   |  |   )(.-' |  (   ) `--.|  | |  (.-'(  (   )(   |(.-'
+`--' `-'`-'  `--''   `-'`-`--'`--`-'   `--'`-'`-'  `-'`-`--'
 
-[TODO: flesh this out a bit more]
+liberasurecode is an Erasure Code API library written in C.  The goal of
+this project is to provide a unified Erasure Coding interface with 
+'pluggable' Erasure Code backends.  
+
+As of v0.9.10, liberasurecode supports 'Jerasure' (Reed-Solomon, Cauchy),
+'Flat XOR HD' backends.  A template 'NULL' backend is implemented to help
+future backend writers.
+
+liberasurecode is designed around Dynamically Loaded (DL) libraries to
+realize a true 'plugin' architecture.  This also allows one to build
+liberasurecode indepdendent of the Erasure Code backend libraries.
+
+liberasurecode is known to work on Linux (Fedora/Debian flavors), Solaris,
+BSD and Darwin/Mac OS X.
+
+liberasurecode is distributed under the terms of the BSD license.
+
+## liberasurecode Frontend API
+
+/* =~=*=~==~=*=~==~=*=~= Supported EC backends =~=*=~==~=*=~==~=*=~==~=*=~== */
+
+typedef enum {
+    EC_BACKEND_NULL                 = 0,
+    EC_BACKEND_JERASURE_RS_VAND     = 1,
+    EC_BACKEND_JERASURE_RS_CAUCHY   = 2,
+    EC_BACKEND_FLAT_XOR_HD          = 3,
+    EC_BACKENDS_MAX,
+} ec_backend_id_t;
+
+#ifndef EC_BACKENDS_SUPPORTED
+#define EC_BACKENDS_SUPPORTED
+/* Supported EC backends */
+static const char *ec_backend_names[EC_BACKENDS_MAX] = {
+    "null",
+    "jerasure_rs_vand",
+    "jerasure_rs_cauchy",
+    "flat_xor_hd",
+};
+#endif // EC_BACKENDS_SUPPORTED
+
+/* ~=*=~==~=*=~= EC Fragment metadata - supported checksum types ~=*=~==~=*=~ */
+
+/* Checksum types supported for fragment metadata stored in each fragment */
+typedef enum {
+    CHKSUM_NONE                     = 0,
+    CHKSUM_CRC32                    = 1,
+    CHKSUM_MD5                      = 2,
+    CHKSUM_TYPES_MAX,
+} ec_checksum_type_t;
+
+#ifndef EC_CHKSUM_TYPES_SUPPORTED
+#define EC_CHKSUM_TYPES_SUPPORTED
+/* Supported EC backends */
+static const char *ec_chksum_types[CHKSUM_TYPES_MAX] = {
+    "none",
+    "crc32",
+    "md5",
+};
+#endif // EC_CHKSUM_TYPES_SUPPORTED
+
+/* =~=*=~==~=*=~== EC Arguments - Common and backend-specific =~=*=~==~=*=~== */
+
+/**
+ * Common and backend-specific args
+ * to be passed to liberasurecode_instance_create()
+ */
+struct ec_args {
+    int k;                  /* number of data fragments */
+    int m;                  /* number of parity fragments */
+    int w;                  /* word size, in bits (optional) */
+    int hd;                 /* hamming distance (=m for Reed-Solomon) */
+
+    union {
+        struct {
+            uint64_t arg1;  /* sample arg */
+        } null_args;        /* args specific to the null codes */
+        struct {
+            uint64_t x, y;  /* reserved for future expansion */
+            uint64_t z, a;  /* reserved for future expansion */
+        } reserved;
+    } priv_args1;
+
+    void *priv_args2;       /** flexible placeholder for
+                              * future backend args */
+    ec_checksum_type_t ct;  /* fragment checksum type */
+};
+
+/* =~=*=~==~=*=~== liberasurecode frontend API functions =~=*=~==~=~=*=~==~= */
+
+/* liberasurecode frontend API functions */
+
+/**
+ * Returns a list of EC backends implemented/enabled - the user
+ * should always rely on the return from this function as this
+ * set of backends can be different from the names listed in
+ * ec_backend_names above.
+ *
+ * @param num_backends - pointer to int, size of list returned
+ *
+ * @return list of EC backends implemented
+ */
+const char ** liberasurecode_supported_backends(int *num_backends);
+
+/**
+ * Returns a list of checksum types supported for fragment data, stored in
+ * individual fragment headers as part of fragment metadata
+ *
+ * @param num_checksum_types - pointer to int, size of list returned
+ *
+ * @return list of checksum types supported for fragment data
+ */
+const char ** liberasurecode_supported_checksum_types(int *num_checksum_types);
+
+/**
+ * Create a liberasurecode instance and return a descriptor 
+ * for use with EC operations (encode, decode, reconstruct)
+ *
+ * @param backend_name - one of the supported backends as
+ *        defined by ec_backend_names
+ * @param ec_args - arguments to the EC backend
+ *        arguments common to all backends
+ *          k - number of data fragments
+ *          m - number of parity fragments
+ *          w - word size, in bits
+ *          hd - hamming distance (=m for Reed-Solomon)
+ *          ct - fragment checksum type (stored with the fragment metadata)
+ *        backend-specific arguments
+ *          null_args - arguments for the null backend
+ *          flat_xor_hd, jerasure do not require any special args
+ *      
+ * @return liberasurecode instance descriptor (int > 0)
+ */
+int liberasurecode_instance_create(const char *backend_name,
+                                   struct ec_args *args);
+
+/**
+ * Close a liberasurecode instance
+ *
+ * @param desc - liberasurecode descriptor to close
+ *
+ * @return 0 on success, otherwise non-zero error code
+ */
+int liberasurecode_instance_destroy(int desc);
+
+
+/**
+ * Erasure encode a data buffer
+ *
+ * @param desc - liberasurecode descriptor/handle
+ *        from liberasurecode_instance_create()
+ * @param orig_data - data to encode
+ * @param orig_data_size - length of data to encode
+ * @param encoded_data - pointer to _output_ array (char **) of k data
+ *        fragments (char *), allocated by the callee
+ * @param encoded_parity - pointer to _output_ array (char **) of m parity
+ *        fragments (char *), allocated by the callee
+ * @param fragment_len - pointer to _output_ length of each fragment, assuming
+ *        all fragments are the same length
+ *
+ * @return 0 on success, -error code otherwise
+ */
+int liberasurecode_encode(int desc,
+        const char *orig_data, uint64_t orig_data_size, /* input */
+        char ***encoded_data, char ***encoded_parity,   /* output */
+        uint64_t *fragment_len);                        /* output */
+
+/**
+ * Cleanup structures allocated by librasurecode_encode
+ *
+ * The caller has no context, so cannot safely free memory
+ * allocated by liberasurecode, so it must pass the
+ * deallocation responsibility back to liberasurecode.
+ *
+ * @param desc - liberasurecode descriptor/handle
+ *        from liberasurecode_instance_create()
+ * @param encoded_data - (char **) array of k data
+ *        fragments (char *), allocated by liberasurecode_encode
+ * @param encoded_parity - (char **) array of m parity
+ *        fragments (char *), allocated by liberasurecode_encode
+ *
+ * @return 0 in success; -error otherwise
+ */
+int liberasurecode_encode_cleanup(int desc, char **encoded_data,
+        char **encoded_parity);
+
+/**
+ * Reconstruct original data from a set of k encoded fragments
+ *
+ * @param desc - liberasurecode descriptor/handle
+ *        from liberasurecode_instance_create()
+ * @param fragments - erasure encoded fragments (> = k)
+ * @param num_fragments - number of fragments being passed in
+ * @param fragment_len - length of each fragment (assume they are the same)
+ * @param out_data - _output_ pointer to decoded data
+ * @param out_data_len - _output_ length of decoded output
+ *          (both output data pointers are allocated by liberasurecode,
+ *           caller invokes liberasurecode_decode_clean() after it has
+ *           read decoded data in 'out_data')
+ *
+ * @return 0 on success, -error code otherwise
+ */
+int liberasurecode_decode(int desc,
+        char **available_fragments,                     /* input */
+        int num_fragments, uint64_t fragment_len,       /* input */
+        char **out_data, uint64_t *out_data_len);       /* output */
+
+/**
+ * Cleanup structures allocated by librasurecode_decode
+ *
+ * The caller has no context, so cannot safely free memory
+ * allocated by liberasurecode, so it must pass the
+ * deallocation responsibility back to liberasurecode.
+ *
+ * @param desc - liberasurecode descriptor/handle
+ *        from liberasurecode_instance_create()
+ * @param data - (char *) buffer of data decoded by librasurecode_decode
+ *
+ * @return 0 on success; -error otherwise
+ */
+int liberasurecode_decode_cleanup(int desc, char *data);
+
+/**
+ * Reconstruct a missing fragment from a subset of available fragments
+ *
+ * @param desc - liberasurecode descriptor/handle 
+ *        from liberasurecode_instance_create()
+ * @param available_fragments - erasure encoded fragments
+ * @param num_fragments - number of fragments being passed in
+ * @param fragment_len - size in bytes of the fragments
+ * @param destination_idx - missing idx to reconstruct
+ * @param out_fragment - output of reconstruct
+ *
+ * @return 0 on success, -error code otherwise
+ */
+int liberasurecode_reconstruct_fragment(int desc,
+        char **available_fragments,                     /* input */
+        int num_fragments, uint64_t fragment_len,       /* input */
+        int destination_idx,                            /* input */
+        char* out_fragment);                            /* output */
+
+/**
+ * Return a list of lists with valid rebuild indexes given
+ * a list of missing indexes.
+ *
+ * @desc: liberasurecode instance descriptor (obtained with
+ *        liberasurecode_instance_create)
+ * @fragments_to_reconstruct list of indexes to reconstruct
+ * @fragments_to_exclude list of indexes to exclude from 
+ *        reconstruction equation
+ * @fragments_needed list of fragments needed to reconstruct
+ *        fragments in fragments_to_reconstruct
+ *
+ * @return 0 on success, non-zero on error
+ */
+int liberasurecode_fragments_needed(int desc,
+        int *fragments_to_reconstruct, 
+        int *fragments_to_exclude,
+        int *fragments_needed);
+
+
+/* ==~=*=~==~=*=~== liberasurecode fragment metadata routines ==~*==~=*=~==~ */
+
+#define LIBERASURECODE_MAX_CHECKSUM_LEN 8
+typedef struct __attribute__((__packed__))
+fragment_metadata
+{
+    uint32_t    idx;                /* 4 */
+    uint32_t    size;               /* 4 */
+    uint64_t    orig_data_size;     /* 8 */
+    uint8_t     chksum_type;        /* 1 */
+    uint32_t    chksum[LIBERASURECODE_MAX_CHECKSUM_LEN]; /* 32 */
+    uint8_t     chksum_mismatch;    /* 1 */
+} fragment_metadata_t;
+
+#define FRAGSIZE_2_BLOCKSIZE(fragment_size) \
+    (fragment_size - sizeof(fragment_header_t))
+
+/**
+ * Get opaque metadata for a fragment.  The metadata is opaque to the
+ * client, but meaningful to the underlying library.  It is used to verify
+ * stripes in verify_stripe_metadata().
+ *
+ * @param desc - liberasurecode descriptor/handle
+ *        from liberasurecode_instance_create()
+ * @param fragment - fragment data pointer
+ * @param fragment_metadata - pointer to allocated buffer of size at least
+ *        sizeof(struct fragment_metadata) to hold fragment metadata struct
+ *
+ * @return 0 on success, non-zero on error
+ */
+int liberasurecode_get_fragment_metadata(int desc,
+        char *fragment, fragment_metadata_t *fragment_metadata);
+
+/**
+ * Verify a subset of fragments generated by encode()
+ *
+ * @param desc - liberasurecode descriptor/handle
+ *        from liberasurecode_instance_create()
+ * @param fragments - fragments part of the EC stripe to verify
+ * @param num_fragments - number of fragments part of the EC stripe
+ *
+ * @return 1 if stripe checksum verification is successful, 0 otherwise
+ */
+int liberasurecode_verify_stripe_metadata(int desc,
+        char **fragments, int num_fragments);
+
+/* ==~=*=~===~=*=~==~=*=~== liberasurecode Helpers ==~*==~=*=~==~=~=*=~==~= */
+
+/**
+ * This computes the aligned size of a buffer passed into 
+ * the encode function.  The encode function must pad fragments
+ * to be algined with the word size (w) and the last fragment also
+ * needs to be aligned.  This computes the sum of the algined fragment
+ * sizes for a given buffer to encode.
+ *
+ * @param desc - liberasurecode descriptor/handle
+ *        from liberasurecode_instance_create()
+ * @param data_len - original data length in bytes
+ *
+ * @return aligned length, or -error code on error
+ */
+int liberasurecode_get_aligned_data_size(int desc, uint64_t data_len);
+ 
+/**
+ * This will return the minimum encode size, which is the minimum
+ * buffer size that can be encoded.
+ * 
+ * @param desc - liberasurecode descriptor/handle
+ *        from liberasurecode_instance_create()
+ *
+ * @return minimum data length length, or -error code on error
+ */
+int liberasurecode_get_minimum_encode_size(int desc);
+
+/* ==~=*=~===~=*=~==~=*=~== liberasurecode Error codes =~=*=~==~=~=*=~==~== */
+
+/* Error codes */
+typedef enum {
+    EBACKENDNOTSUPP  = 200,
+    EECMETHODNOTIMPL = 201,
+    EBACKENDINITERR  = 202,
+    EBACKENDINUSE    = 203,
+    EBACKENDNOTAVAIL = 204,
+} LIBERASURECODE_ERROR_CODES;
+
+/* =~=*=~==~=*=~==~=*=~==~=*=~===~=*=~==~=*=~===~=*=~==~=*=~===~=*=~==~=*=~= */
+```
 
 ## Code organization
 
 ```
+├── include
+│   ├── erasurecode
+│   │   ├── erasurecode.h            --> liberasurecode frontend API header
+│   │   └── erasurecode_backend.h    --> liberasurecode backend API header
+│   └── xor_codes                    --> headers for the built-in XOR codes
+|
+├── src
+│   ├── erasurecode.c                --> liberasurecode API implementation
+|   |                                    (frontend + backend)
+│   ├── backends
+│   │   └── null
+│   │       └─── null.c              --> 'null' erasure code backend
+│   │   └── xor
+│   │       └─── flat_xor_hd.c       --> 'flat_xor_hd' erasure code backend
+│   │   └── jerasure                 
+│   │       ├── jerasure_rs_cauchy.c --> 'jerasure_rs_vand' erasure code backend
+│   │       └── jerasure_rs_vand.c   --> 'jerasure_rs_cauchy' erasure code backend
+|   |
+│   ├── builtin
+│   │   └── xor_codes                --> XOR HD code backend, built-in erasure
+|   |       |                            code implementation (shared library)
+│   │       ├── xor_code.c
+│   │       └── xor_hd_code.c
+|   |
+│   └── utils
+│       └── chksum                   --> fragment checksum utils for erasure
+│           ├── alg_sig.c                coded fragments
+│           └── crc32.c
+|
+├── doc                              --> API Documentation
+│   ├── Doxyfile
+│   └── html
+|
+└─── test                            --> Test routines
+│    ├── builtin
+|    │   └── xor_codes
+│    ├── liberasurecode_test.c
+│    └── utils
+|
+├── autogen.sh
+├── configure.ac
+├── Makefile.am
 ├── README
 ├── NEWS
 ├── COPYING
 ├── AUTHORS
 ├── INSTALL
 ├── ChangeLog
-|
-├── autogen.sh
-├── configure.ac
-├── Makefile.am
-|
-├── include
-│   ├── erasurecode
-│   │   ├── erasurecode.h           --> liberasurecode frontend API header
-│   │   └── erasurecode_backend.h   --> liberasurecode backend API header
-│   └── xor_codes
-|
-├── src
-│   ├── erasurecode.c               --> liberasurecode API implementation
-|   |                                   (frontend + backend)
-│   ├── backends
-│   │   └── xor
-│   │       └─── flat_xor_hd.c      --> 'flat_xor_hd' erasure code backend
-|   |                                   implementation
-|   |
-│   ├── builtin
-│   │   └── xor_codes               --> XOR HD code backend, built-in to
-|   |       |                           liberasurecode
-│   │       ├── xor_code.c
-│   │       └── xor_hd_code.c
-|   |
-│   └── utils
-│       └── chksum                  --> fragment checksum utils for erasure
-│           ├── alg_sig.c               coded fragments
-│           └── crc32.c
-└─── test                           --> Test routines
-    ├── builtin
-    │   └── xor_codes
-    ├── liberasurecode_test.c
-    └── utils
 ```
 
-## Dependencies
-
 ## Build
 
 To build the liberasurecode repository, perform the following from the 
@@ -64,3 +418,4 @@ top-level directory:
 `$ make test`
 `$ sudo make install`
 
+--

include/erasurecode/erasurecode.h

@@ -1,5 +1,5 @@
 /* 
- * <Copyright>
+ * Copyright 2014, Tushar Gohad, Kevin Greenan, All rights reserved
  *
  * Redistribution and use in source and binary forms, with or without
  * modification, are permitted provided that the following conditions are met:
@@ -200,7 +200,8 @@ int liberasurecode_encode(int desc,
  *
  * @return 0 in success; -error otherwise
  */
-int liberasurecode_encode_cleanup(int desc, char **encoded_data, char **encoded_parity);
+int liberasurecode_encode_cleanup(int desc, char **encoded_data,
+        char **encoded_parity);
 
 /**
  * Reconstruct original data from a set of k encoded fragments

src/backends/jerasure/jerasure_rs_cauchy.c

@@ -1,5 +1,5 @@
 /* 
- * <Copyright>
+ * Copyright 2014 Kevin M Greenan
  *
  * Redistribution and use in source and binary forms, with or without
  * modification, are permitted provided that the following conditions are met:

src/backends/jerasure/jerasure_rs_vand.c

@@ -1,5 +1,5 @@
 /* 
- * <Copyright>
+ * Copyright 2014 Kevin M Greenan
  *
  * Redistribution and use in source and binary forms, with or without
  * modification, are permitted provided that the following conditions are met:

src/backends/null/null.c

@@ -1,5 +1,5 @@
 /* 
- * <Copyright>
+ * Copyright 2014 Tushar Gohad
  *
  * Redistribution and use in source and binary forms, with or without
  * modification, are permitted provided that the following conditions are met:

src/backends/xor/flat_xor_hd.c

@@ -1,5 +1,5 @@
 /* 
- * <Copyright>
+ * Copyright 2014 Tushar Gohad
  *
  * Redistribution and use in source and binary forms, with or without
  * modification, are permitted provided that the following conditions are met:

src/erasurecode.c

@@ -1,5 +1,5 @@
 /*
- * <Copyright>
+ * Copyright 2014 Tushar Gohad, Kevin M Greenan, Eric Lambert, Mark Storer
  *
  * Redistribution and use in source and binary forms, with or without
  * modification, are permitted provided that the following conditions are met:

src/erasurecode_helpers.c

@@ -1,5 +1,5 @@
 /*
- * <Copyright>
+ * Copyright 2014 Tushar Gohad, Kevin M Greenan, Eric Lambert
  *
  * Redistribution and use in source and binary forms, with or without
  * modification, are permitted provided that the following conditions are met:

src/erasurecode_postprocessing.c

@@ -1,5 +1,5 @@
 /*
- * <Copyright>
+ * Copyright 2014 Tushar Gohad, Kevin M Greenan, Eric Lambert
  *
  * Redistribution and use in source and binary forms, with or without
  * modification, are permitted provided that the following conditions are met:

src/erasurecode_preprocessing.c

@@ -1,5 +1,5 @@
 /*
- * <Copyright>
+ * Copyright 2014 Tushar Gohad, Kevin M Greenan, Eric Lambert, Mark Storer
  *
  * Redistribution and use in source and binary forms, with or without
  * modification, are permitted provided that the following conditions are met:

test/libec_slap.c

@@ -1,5 +1,5 @@
 /*
- * <Copyright>
+ * Copyright 2014 Eric Lambert
  *
  * Redistribution and use in source and binary forms, with or without
  * modification, are permitted provided that the following conditions are met:

test/liberasurecode_test.c

@@ -1,5 +1,5 @@
 /* 
- * <Copyright>
+ * Copyright 2014 Eric Lambert, Tushar Gohad, Kevin Greenan
  *
  * Redistribution and use in source and binary forms, with or without
  * modification, are permitted provided that the following conditions are met: